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custom 8 3 60k acgh array  (Agilent technologies)


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    Agilent technologies custom 8 3 60k acgh array
    Custom 8 3 60k Acgh Array, supplied by Agilent technologies, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/custom 8 3 60k acgh array/product/Agilent technologies
    Average 90 stars, based on 1 article reviews
    custom 8 3 60k acgh array - by Bioz Stars, 2026-04
    90/100 stars

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    Extent and pattern of the HER2 -amplicon on chromosome 17q12-q21 in HER2+ BC . ( A) Frequency of amplification across 200 HER2 -amplified tumors analyzed by BAC aCGH. Frequency estimates correspond to number of tumors with segmented log 2 ratio >0.5 for respective BAC probe and are displayed at respective BAC probe's center position (red circles). Shortest region of amplification overlap (SRO) was defined from involved BAC probes genomic start and stop position and is marked with a light gray background. Genomic position of eight BAC probes mapping to the SRO is displayed together with their center position (black circle). ( B) Close-up of chr17:35000001-35200000 (hg18 build) for tumor TAX577717 analyzed by zoom-in oligonucleotide aCGH. ( C) Close-up of chr17:35000001-35867695 (hg18 build) for tumor TAX577700 analyzed by zoom-in aCGH.

    Journal: Breast Cancer Research : BCR

    Article Title: High-resolution genomic and expression analyses of copy number alterations in HER2-amplified breast cancer

    doi: 10.1186/bcr2568

    Figure Lengend Snippet: Extent and pattern of the HER2 -amplicon on chromosome 17q12-q21 in HER2+ BC . ( A) Frequency of amplification across 200 HER2 -amplified tumors analyzed by BAC aCGH. Frequency estimates correspond to number of tumors with segmented log 2 ratio >0.5 for respective BAC probe and are displayed at respective BAC probe's center position (red circles). Shortest region of amplification overlap (SRO) was defined from involved BAC probes genomic start and stop position and is marked with a light gray background. Genomic position of eight BAC probes mapping to the SRO is displayed together with their center position (black circle). ( B) Close-up of chr17:35000001-35200000 (hg18 build) for tumor TAX577717 analyzed by zoom-in oligonucleotide aCGH. ( C) Close-up of chr17:35000001-35867695 (hg18 build) for tumor TAX577700 analyzed by zoom-in aCGH.

    Article Snippet: Custom-designed 60-mer oligonucleotide zoom-in aCGH arrays with an average probe-to-probe spacing of 100 bp in the 17q12-q21 region were designed using the Agilent eArray ver.

    Techniques: Amplification